Category Archives: Evolutionary Theory

Evo-Devo and Arrival of the Fittest

The molecular mechanisms that bring about biological form in modern-day embryos … should not be confused with the causes that led to the appearance of these forms in the first place … selection can only work on what already exists. (G. B. Muller and S. A. Newman 2003: 3, Origination of Organismal Form: Beyond the Gene in Developmental and Evolutionary Biology)

Cited in Minelli and Fusco 2008: xv. Evolving Pathways: Key Themes in Evolutionary Developmental Biology.

~ ~ ~

The evolution of organismal form consists of a continuing production and ordering of anatomical parts: the resulting arrangement of parts is nonrandom and lineage specific. The organization of morphological order is thus a central feature of organismal evolution, whose explanation requires a theory of morphological organization. Such a theory will have to account for (1) the generation of initial parts; (2) the fixation of such parts in lineage-specific combinations; (3) the modification of parts; (4) the loss of parts; (5) the reappearance of lost parts [atavism]; and (6) the addition of new parts. Eventually, it will have to specify proximate and ultimate causes for each of these events as well.

Only a few of the processes listed above are addressed by the canonical neo-Darwinian theory, which is chiefly concerned with gene frequencies in populations and with the factors responsible for their variation and fixation. Although, at the phenotypic level, it deals with the modification of existing parts, the theory is intended to explain neither the origin of parts, nor morphological organization, nor innovation. In the neo-Darwinian world the motive factor for morphological change is natural selection, which can account for the modification and loss of parts. But selection has no innovative capacity; it eliminates or maintains what exists. The generative and the ordering aspects of morphological evolution are thus absent from evolutionary theory.

— Muller, Gerd B. (2003) Homology: The Evolution of Morphological Organization. In Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology. (eds., Gerd B. Muller and Stuart A. Newman). The Vienna Series in Theoretical Biology. MIT Press. p. 51.

~ ~ ~

What is evo-devo? Undoubtedly this is a shorthand for evolutionary developmental biology. There, however, agreement stops. Evo-devo has been regarded as either a new discipline within evolutionary biology or simply a new perspective upon it, a lively interdisciplinary field of studies, or even necessary complement to the standard (neo-Darwinian) theory of evolution, which is an obligate step towards an expanded New Synthesis. Whatever the exact nature of evo-devo, its core is a view of the process of evolution in which evolutionary change is the transformation of (developmental) processes rather than (genetic or phenotypic) patterns. Thus our original question could be more profitably rephrased as: What is evo-devo for? (Minelli and Fusco 2008: 1)

(….) Evo-devo aims to provide a mechanistic explanation of how developmental mechanisms have changed during evolution, and how these modifications are reflected in changes in organismal form. Thus, in contrast with studies on natural selection, which aim to explain the ‘survival of the fittest’, the main target of evo-devo is to determine the mechanisms behind the ‘arrival of the fittest’. At the most basic level, the mechanistic question about the arrival of the fittest involves changes in the function of genes controlling developmental programs. Thus it is important to reflect on the nature of the elements and systems underlying inheritable developmental modification using an updated molecular background. (Minelli and Fusco 2008: 2)

Biology and Ideology

Why should we be concerned about biology and ideology? One good reason is that the use of biology for non-biological ends has been the cause of immense human suffering. Biology has been used to justify eugenic genic programs, enforced sterilization, experimentation on living humans, death camps, and political ambitions based on notions of racial superiority, ity, to name but a few examples. We should also be concerned because biological ideas continue to be used, if not in these specific ways, then in other ways that lie well beyond science. Investigating the past should help us to be more reflective about the science of our own day, hopefully more equipped to discern the ideological abuse of science when it occurs. (Alexander and Numbers 2010)

Not so many decades ago science represented the antithesis of ideology. Indeed, science rested securely on a pedestal, enshrined as the very “norm of truth.” According to the founding father of the history of science, George Sarton (1884-1956), the “main purpose” of science, pursued by disinterested scholars, was “the discovery of truth.” Convinced that science was the only human activity that “is obviously and undoubtedly cumulative and progressive,” he described the history of science as “the story of a protracted struggle, which will never end, against the inertia of superstition and ignorance, against the liars and hypocrites, and the deceivers and the self-deceived, against all the forces of darkness and nonsense.” (Alexander and Numbers 2010)

By the late nineteenth century, practicing scientists, as well as science educators and popularizers, were increasingly attributing the success of science to something called “the scientific method,” a slippery but rhetorically powerful slogan. In the words of the distinguished American astronomer Simon Newcomb, who devoted considerable thought to scientific methodology, “the most marked characteristic of the science of the present day … is its entire rejection of all speculation on propositions which do not admit of being brought to the test of experience.”‘ (Alexander and Numbers 2010)

To such devotees, science was not only true but edifying, totally unlike the “grubby worlds” of business and politics. As Harvard president Charles W. Eliot, an erstwhile chemist, declared at the opening of the American Museum of Natural History in 1878, science produced a “searching, open, humble mind … having no other end than to learn, prizing above all things accuracy, thoroughness, and candor.” Many of its practitioners, asserts the historian David A. Hollinger, saw science “as a religious calling,” “a moral enterprise.” Those who used science for ideological purposes often found themselves denounced as charlatans and pseudo-scientists. (Alexander and Numbers 2010)

Until well into the twentieth century neither scientists themselves nor the scholars who studied science linked science with ideology, a term coined in the late eighteenth century and typically employed pejoratively to designate ideas in the use of particular interests. Among the first to connect ideology and science were Karl Marx and his followers, who identified “ideologies” as ideas that served the social interests of the bourgeoisie. Western historians of science first encountered the linkage between science and ideology at the Second International Congress of the History of Science and Technology, held in London in 1931, when a delegation from the Soviet Union contrasted “the relations between science, technology, and economics” under the capitalist and socialist systems. The Russian physicist Boris Hessen, under intense political pressure at home to prove his Marxist orthodoxy, delivered an iconoclastic paper on “The Socio- Economic Roots of Newton’s Principia,” which described Newtonian science in the service of the ideological (that is, industrial and commercial) needs of the rising bourgeoisie. Despite his bravura effort, he died in a Soviet prison five years later, falsely convicted of terrorism. (Alexander and Numbers 2010)

Such “vulgar Marxism” exerted little influence on the writing of the history of science outside the Soviet Union. It was not until the 1960s that Marxism penetrated Anglo-American historiography, largely through the efforts of Robert M. (Bob) Young, an expatriate Texan working in Cambridge, bridge, England. In 1970, at a conference on “The Social Impact of Modern Biology,” he delivered a paper on “Evolutionary Biology and Ideology,” in which he “treated science as ideology.” He acknowledged that the term “ideology” traditionally had derogatory and political connotations that were connected with its popularization by Marx, who concentrated his use of it as a term of abuse for ideas that served as weapons for social interests. But Marxists were soon subjected to their own critique, and this led to Young’s general definition of ideology:

When a particular definition of reality comes to be attached to a concrete power interest, it may be called an ideology…. In its early manifestations the concept of ideology conveyed a sense of more or less conscious distortion bordering on deliberate lies. I do not mean to imply this…. [T]he effort to absorb the ideological logical point of view into positive science only illustrates the ubiquitousness of ideology in intellectual life…. We need to see that ideology is an inescapable level of discourse.

In contrast to earlier Marxists, who had damned ideology as inimical to good science, Young argued that all facts are theory-laden and that no science is value-free. The late historian Roy Porter described the efforts of Young and his fellow New Marxists as concentrating on “exposing the dazzling conjuring trick whereby science had acquired and legitimated authority precisely while claiming to be value-neutral.” Their goal was to liberate humanity from the thrall of science by demoting it from its privileged intellectual position and relocating it on the same level as other belief systems. Thus, at a time when some observers were declaring “the end of ideology,” a small group of historians of science was rushing to embrace it.

Meanwhile, scholars of a less radical persuasion were also undermining the notion of science as a value-neutral enterprise. In 1958 the philosopher Norwood Russell Hanson, who would soon found the Indiana University program in the history and philosophy of science, published Patterns of Discovery, which described all observations as “theory-laden.” Influenced in part by Hanson, the historian of science Thomas Kuhn published his best-selling The Structure of Scientific Revolutions (1962), by far the most influential book ever written about the history of science and one of the most important books on any topic published in the twentieth century. In his slight monograph, Kuhn challenged Sarton’s cherished notion that science was cumulative, arguing instead that scientific paradigms are incommensurable mensurable and therefore that science does not progressively approach a truthful description of nature. Although he insisted that “there is no standard higher than the assent of the relevant community” in determining the boundaries of good science, he shied away from equating science and ideology. In fact, he used the latter term only to dismiss a commitment to the cumulative nature of science as “the ideology of the scientific profession.” Some critics denounced Kuhn’s work for promoting “irrationality and relativism”—and many postmodernists and other denigrators of science drew inspiration from it in their attempts to undermine the privileged status of science—but Kuhn never joined the revolutionaries. He took pride in the description of The Structure of Scientific Revolutions as “a profoundly conservative book.”

(….) The most influential blow to the traditional separation between science and ideology came in the 197os and 198os from a group of scholars in the Edinburgh University Science Studies Unit dedicated to creating a thoroughgoing sociology of scientific knowledge. Unlike such pioneers in the sociology of science as Robert K. Merton, who explored the impact of social factors on the growth of scientific institutions but left scientific knowledge untainted by ideologies, the Edinburgh scholars advocated a “strong programme” that treated science like any body of knowledge, vulnerable to psychological, social, and cultural factors. These “constructivists” insisted on treating “true” and “false” scientific claims identically and on exploring the role played by “biasing and distorting factors” in both cases, not just for unsuccessful or pseudo-science. Contrary to the claims of some of their critics, they never asserted that science was “purely social” or “that knowledge depended exclusively on social variables such as interests.” “The strong programme says that the social component is always present and always constitutive of knowledge,” explained David Bloor, one of the founders of the Science Studies Unit. “It does not say that it is the only component, or that it is the component that must necessarily be located as the trigger of any and every change.”‘

(….) In the early 198os a young historian of science at Edinburgh, Steven Shapin, collaborated with Simon Schaffer on a landmark book that dramatically illustrated the applicability of the “strong programme” to the history of science. In Leviathan and the Air Pump: Hobbes, Boyle, and the Experimental Life, which the authors described as “an exercise in the sociology ology of scientific knowledge,” Shapin and Schaffer sought to identify the role played by ideology in establishing trust in the experimental way of producing knowledge about the workings of nature. As good constructivists, they treated the views of Thomas Hobbes (the loser) symmetrically with the opinions of Robert Boyle (the winner). In the end they concluded that “scientific activity, the scientist’s role, and the scientific community have always been dependent: they exist, are valued, and supported insofar as the state or its various agencies see point in them.”

By the 199os the sometimes acrimonious debate over ideology and science was dying down. Although a few historians of science held out for value-free science, the great majority, it seems, had come to accept a moderate form of constructivism-not so much for ideological reasons but because the evidence supported it. While rejecting the radical claim that science was merely social, they readily granted the propriety, indeed the necessity, of exploring the constitutive role of ideologies in the making of science. Ideologies had morphed from antiscience to the heart of the scientific enterprise.

But the flow has gone both ways, not only “outwards” from biology into the worlds of politics, philosophy, or social structures, but also “inwards,” with whole scientific programs being shaped by ideological concerns…. At other times there is more of an iterative process of “co-evolution,” as occurred in theories about “racial hygiene” …, whereby the ideology shaped the biology, which in turn was used to prop up the ideology.

(….) [I]deology provides an interpretative framework that serves a social purpose, motivated by ethical, religious, or political convictions. The history of biology does certainly evince ideologies as either motivating or as being justified by certain kinds of scientific research and declaration, and most of the contributors investigate episodes in the history of biology in which biological science has become thoroughly entangled with social causes.

(….) [F]irst systematic investigations of the natural world in the early modern period attracted prestige by their support for natural theology and for the moral order. Even Descartes’ idea of animals as machines without souls, invoking thereby a sharp demarcation between human and animal, was employed as part of the argument for design. (….) Biological ideas connecting life and matter played a central role in the materialistic arguments of the French philosophes, which in turn were employed in the subversion of the social order. (….) [T]he eighteenth century also saw something of a reaction against the mechanistic analogies that had proven so influential in the natural philosophy of the preceding century, reformulating an “Enlightenment vitalism” that sought to revive ideas of nature ture as a dynamic system. This renewed emphasis on the internal driving forces and systematic organization of living things was used to generate a new science of humanity, which in turn was deployed to argue for particular economic and political structures. From the structure of organisms to the structure of societies has often been a short step in the history of biology.

One of the striking insights highlighted by this [history] is the way in which the ideological application of biological concepts is shaped by place as well as time. In some cases the same biological ideas have been used during the same period for quite opposite ideological purposes in different countries. The biology that in France was utilized by the philosophes to subvert the social order was in Britain used as a key resource for natural theology, whereas in Germany it was being used politically as an analogy for the structure of nation states.

Evolution in Four Dimensions

At some point, such heritable regulatory changes will be created in a test animal in the laboratory, generating a trait intentionally drawing on various conserved processes. At that point, doubters [of organic evolution] would have to admit that if humans can generate phenotypic variation in the laboratory in a manner consistent with known evolutionary changes, perhaps it is plausible that facilitated variation has generated change in nature.

Gerhart, C. and Kirschner Marc W. The Plausibility of Life: Resolving Darwin’s Dilemma. New Haven: Yale University Press; 2005; p. 237, emphasis added.

Putting Humpty Dumpty Together Again 

Imagine an entangled bank, clothed with many plants of many kinds, with birds singing in the bushes, with various insects flitting about, with worms crawling through the damp earth, and a square-jawed nineteenth-century naturalist contemplating the scene. What would a modern-day evolutionary biologist have to say about this image—about the plants, the insects, the worms, the singing birds, and the nineteenth-century naturalist deep in thought? What would she say about the evolutionary processes that shaped the scene? (Jablonka 2014, 235)

Undoubtedly the first thing she would say is that the tangled bank image is very familiar, because we borrowed it from the closing paragraph of On the Origin of Species. The nineteenth-century naturalist who is contemplating the scene is obviously Charles Darwin. The famous last paragraph is constantly being quoted, the biologist would tell us, because in it Darwin summarized his theory of evolution. He suggested that over vast spans of time natural selection of heritable variations had produced all the elaborate and interdependent forms in the entangled bank. (Jablonka 2014, 235)

Our modern-day evolutionary biologist would almost certainly go on to say that she thinks Darwin’s theory is basically correct. However, she would also point out that Darwin’s seemingly simple suggestion hides enormous complications because there are several types of heritable variation, they are transmitted in different ways, and selection operates simultaneously on different traits and at different levels of biological organization. Moreover, the conditions that bring about selection—those aspects of the world that make a difference to the reproductive success of a plant or animal—are neither constant nor passive. In the entangled bank, the plants, the singing birds, the bushes, the flitting insects, the worms, the damp earth, and the naturalist observing and experimenting with them form a complex web of ever-changing interactions. The plants and the insects are part of each other’s environment, and both are parts of the birds’ environment and vice versa. The worms help to determine the conditions of life for the plants and birds, and the plants and birds influence the worms’ conditions. Everything interacts. The difficulty for our evolutionary biologist is unraveling how changes occur in the patterns of interactions within the community and within each species. (Jablonka 2014, 235-236)

Take something seemingly simple, like where a plant-eating insect chooses to lay its eggs. Often it will show a strong preference for one particular type of plant. Is this preference determined by its genes, or by its own experiences, or by the experiences of its mother? The answer is that sometimes the insect’s genetic endowment is sufficient to explain the preference, but often behavioral imprinting is involved. Darwin discussed this in the case of cabbage butterflies. If a female butterfly lays her eggs on cabbage, and cabbage is the food of the hatching caterpillars, then when they metamorphose into butterflies her offspring will choose to lay their eggs on cabbage rather than on a related plant. In this way the preference for cabbage is transmitted to descendants by nongenetic means. There are therefore at least two ways of inheriting a preference—genetic and behavioral. An evolutionary biologist would naturally ask whether and how these two are related. Can the experience-dependent preference evolve to become an inbuilt response that no longer depends on experience? Conversely, can an inbuilt preference evolve to become more flexible, so that food preferences are determined by local conditions? (Jablonka 2014, 236)

Similar questions can be asked about the plants on the entangled bank. The most obvious effects of the insects’ behavior are on the survival and reproduction of the plants. Being the preferred food of an insect species may be an advantage to some of them, because it means that their flowers are more readily and efficiently pollinated. If so, those plants that the insects find tasty may become more abundant. Any variation, be it genetic or epigenetic, that makes a plant even more attractive to the insects, or that makes its imprinting effects more effective or reliable, will be selected. Conversely, if the insects’ food preference damages the plants, variations that make it less attractive or more resistant to insect attack will be favored. For example, plants often produce toxic compounds that are protective because insects cannot tolerate them. The ability to produce such toxins will be selected. In some species toxin production is an induced response, brought about by insect attack, but in others it is a permanent part of the plant’s makeup. Once again, an evolutionary biologist would want to know whether there is any significance in this. When there is an induced response, presumably involving changes in gene activities, does this affect the likelihood or nature of changes in the plant’s DNA sequence? Do epigenetic variations bias the rate or the direction of genetic changes? Are the genetic and epigenetic responses related in any way? (Jablonka 2014, 236-237)

How would an evolutionary biologist think about the worms that feature in Darwin’s entangled bank? Earthworms must have been one of Darwin’s favorite animals, because he devoted the whole of his last book to them. Visitors to Down House, his home for many years, can still see vestiges of his worm experiments in the garden there. Earthworms are a good example of something that is true for many animals and plants: they help to construct their own environment. Darwin realized that as earthworms burrow through the soil, mixing it, passing it through their guts, and leaving casts on the surface, they change the soil’s properties. The environment constructed by the earthworms’ activities is the one in which they and their descendants will grow, develop, and be selected. An evolutionary biologist therefore wants to know how the species’ ability to change its environment and pass on the newly constructed environment to its descendants influences its evolution. How important is such niche construction? (Jablonka, Eva. Evolution in Four Dimensions (Jablonka 2014, 237)

Very wisely, Darwin avoided mentioning human beings when he summarized his “laws” of evolution in the final paragraph of The Origin. He realized that suggesting that humans had evolved from apelike ancestors would land him in very deep trouble, and he was going to be in enough trouble as it was. Although he knew full well that his own species is also a product of natural selection, he left discussing it to a later book. He did devote a lot of space in The Origin to humans, however. In particular, he described how, through selection, they had changed plants and animals during domestication. Darwin would have been well aware that the naturalist observing the entangled bank was potentially the most powerful evolutionary influence acting on it. Humans could divert a stream, so that the bank dries out and many of the organisms inhabiting it die; or they might introduce new plants or animals, thereby altering the whole web of interactions in the bank. Without doubt, humans are the major selective agents on our planet, and have carried out the most dramatic reconstruction (usually destruction) of environments. Today, in addition to changing plants and animals by artificial selection, humans can alter the genetic, epigenetic, and behavioral state of organisms by direct genetic, physiological, and behavioral manipulations. We are only at the beginning of this man-made evolutionary revolution, which will affect our own species as well as others. Our ability to manipulate evolution in this way is derived from the human capacity to think and communicate in symbols. Through the symbolic system, we have the power of planning and foresight. As the evolutionary biologist knows, this has had and will continue to have effects on all biological evolution. (Jablonka 2014, 237-240)

As she looks at the entangled bank, a modern-day evolutionary biologist would know that explaining how natural selection has produced the complex, interacting living forms she sees is a formidable task. She could recruit the help of specialists, who might enable her to explain bits of the scene: the geneticists could look at the genetic variants in the plant and animal populations, and see how they influence survival and reproductive success; the physiologists, biochemists, and developmental biologists could look at the adaptive capacity of individuals; the ethologists and psychologists could tell her about the animals’ behavior, and how it is shaped by and shapes conditions; the sociologists and historians would tell her what role humans have had in developing the bank; the ecologists would investigate the interactions between the plants, animals, and their physical environment. Each of the specialists would probably be convinced that their own findings and interpretations are the most significant for understanding the whole picture, and that the other parts of the study are of marginal significance. This is what usually happens when people look at the isolated parts of a system. A lot of knowledge can be gained from this approach, but eventually it is necessary to reassemble the bits—to put Humpty Dumpty together again. How do the genetic, epigenetic, behavioral, and cultural dimensions of heredity and evolution fit together? What influence have they had on each other? (Jablonka 2014, 240)

[Now, Jablonka, begins the interesting part of the story, putting Humpty Dumpty back together again, the unfinished synthesis, still in progress, the re-synthesis of evolutionary theory which includes development, epigenetics, and ongoing revelations that few can even keep pace with.]

Natural Selection as a Creative Force

The evolutionary synthesis [i.e., neo-Darwinian theory] came unraveled for me during the period since 1980. Historically, my examination of this period, after editing with Ernst Mayr “The Evolutionary Synthesis” (Mayer and Provine 1980), showed that it was not a synthesis, but rather a systematic diminution of the factors in evolution, and I now call it the “evolutionary constriction” (Provine 1989). The unity of evolutionary biology inherent in the “synthesis” has been replaced by a much more interesting and fascinating complex of different levels marching to different drummers…..In 1970 I could see the origins of theoretical population genetics as being an unalloyed good for evolutionary biology, and thus obviously a great subject for an historian. Now I see these same theoretical models of the early 1930s, still widely used today, as an impediment to understanding evolutionary biology, and their amazing persistence in textbooks and classrooms as a great topic for other historians.

Provine, William B. The Origins of Theoretical Population Genetics. Chicago: Chicago University Press; 2001; c1971 pp. 203-204.

~ ~ ~

Natural selection ranked as a standard item in biological discourse—but with a crucial difference from Darwin’s version: the usual interpretation invoked natural selection as part of a larger argument for created permanency. Natural selection, in this negative formulation, acted only to preserve the type, constant and inviolate, by eliminating extreme variants and unfit individuals who threatened to degrade the essence of created form. (Gould 2002: 137-139)

(….) Darwin’s theory … cannot be equated with the simple claim that natural selection operates. Nearly all his colleagues and predecessors accepted this postulate. Darwin, in his characteristic and radical way, grasped that this standard mechanism for preserving the type could be inverted, and then converted into the primary cause of evolutionary change. Natural selection obviously lies at the center of Darwin’s theory, but we must recognize, as Darwin’s second key postulate, that claim that natural selection acts as the creative force of evolutionary change. The essence of Darwinism cannot reside in the mere observation that natural selection operates—for everyone had long accepted a negative role for natural selection in eliminating the unfit and preserving the type. (Gould 2002: 139)

(….) We have lost this context and distinction today, and our current perspective often hampers an understanding of the late 19th century literature and its preoccupations. Anyone who has read deeply in this literature knows that no argument inspired more discussion, while no Darwinian claim seemed more vulnerable to critics, than the proposition that natural selection should be viewed as a positive force, and therefore as the primary cause of evolutionary change. The “creativity of natural selection”—the phrase generally used in Darwin’s time as a shorthand description of the problem—set the cardinal subject for debate about evolutionary mechanisms during Darwin’s lifetime and throughout the late 19th century. [It is poised to once again become the central question due to the scientific discoveries taking place in the fields of epigenetics and developmental biology (evo-devo).] (Gould 2002: 139)

Non-Darwinian evolutionists did not deny the reality, or the operationality, of natural selection as a genuine cause stated in the most basic or abstract manner. (….) They held, rather, that natural selection, as a headsman or executioner, could only eliminate the unfit, while some other cause must play the positive role of constructing the fit. (Gould 2002: 139)

(….) We can understand the trouble that Darwin’s contemporaries experienced in comprehending how selection could work as a creative force when we confront the central paradox of Darwin’s crucial argument: natural selection makes nothing; it can only choose among variants originating by other means. How then can selection possibly be conceived as a “progressive,” or “creative,” or “positive” force? (Gould 2002: 140)

The Requirements for Variation

In order to act as raw material only, variation must walk a tightrope between two unacceptable alternatives. First and foremost, variation must exist in sufficient amounts, for natural selection can make nothing, and must rely upon bounty thus provided; but variation must not be too florid or showy either, lest it become the creative agent of change itself. Variation, in short, must be copious, small in extent, and undirected. A full taxonomy of non-Darwinian evolutionary theories may be elaborated by their denials of one or more of these central assumptions. (Gould 2002: 141)

COPIOUS. Since natural selection makes nothing and can only work with raw material presented to its stringent review, variation must be generated in copious and dependable amounts…. Darwin’s scenario for selective modification always includes the postulate, usually stated explicitly, that all structures vary, and therefore evolve…. If these universally recognized distinctions arise as consequences of differences in the intrinsic capacity of species to vary, then Darwin’s key postulate of copiousness would be compromised—for failure of sufficient raw material would then be setting a primary limit upon the rate and style of evolutionary change, and selection would not occupy the driver’s seat. (Gould 2002: 141-142)

Darwin responds by denying this interpretation, and arguing that differing intensities of selection, rather than intrinsically distinct capacities for variation, generally cause the greater or lesser differentiation observed among domestic species. I regard this argument as among the most forced and uncomfortable in the Origin—a rare example of Darwinian special pleading. But Darwin realizes the centrality of copiousness to his argument for the creativity of natural selection, and he must therefore face the issue directly:

Although I do not doubt that some domestic animals vary less than others, yet the rarity or absence of distinct breeds for the cat, the donkey, peacock, goose, etc., may be attributed in main part to selection not having been brought into play: in cats, from the difficulty in pairing them; in donkeys, from only a few being kept by poor people and little attention paid to their breeding; in peacocks, from not being very easily reared and a large stock not kept; in geese, from being valuable only for two purposes, food and feathers, and more especially from no pleasure having been felt the display of distinct breeds (p. 42).

On the Origin of Species

Second, copiousness must also be asserted in the face of a powerful argument about limits to variation following modal departure from “type.” To use Fleeming Jenkin’s (1867) famous analogy: a species may be compared to a rigid sphere, with modal morphology of individuals at the center, and limits to variation defined by the surface. So long as individuals lie near the center, variation will be copious in all directions [isotropic; non-directional]. But if selection brings the mode to the surface, then further variation in the same direction will cease—and evolution will be stymied by an intrinsic limitation upon raw material, even when selection would favor further movement. Evolution, in other words, might consume its own fuel and bring itself to an eventual halt thereby. This potential refutation stood out as especially serious—not only for threatening the creativity of natural selection, but also for challenging the validity of uniformitarian extrapolation as a methodology of research. Darwin responded, as required by logical necessity, that such limits do not exist, and that new spheres of equal radius can be reconstructed around new modes: “No case is on record of a variable being ceasing to be variable under cultivation. Our oldest cultivated plants, such as wheat, still often yield new varieties: our oldest domesticated animals are still capable of rapid improvement or modification” (p. 8). (Gould 2002: 142)

(….) One of the most appealing features of Mendalism a strong reason for acceptance following its “rediscovery” in 1900 lay in the argument that mutation could restore variation “used up” by selection. (Gould 2002: 143) [See Klein & Tanaka, 2002, “Where Do We Come From: The Molecular Evidence for Human Descent,” p. 197-204, regarding atavism.]

SMALL IN EXTENT. If the variations that yielded evolutionary change were large—producing new major features, or even new taxa in a single step then natural selection would not disappear as an evolutionary force. Selection would still function in an auxiliary and negative role as headsman—to heap, up the hecatomb of the unfit, permit new saltation to spread among organisms in subsequent generations, and eventually to take over the population. But Darwinism, as a theory of evolutionary change, would perish—for selection would become both subsidiary and negative, and variation itself would emerge as the primary, and truly creative, force of evolution, the source of occasionally lucky saltation. For this reason, the quite properly, saltationist (or macromutational) theories have always been viewed as anti-Darwinian—despite the protestations of de Vries …, who tried to retrain the Darwinian label for his continued support of selection as a negative force. The unthinking, knee-jerk response of many orthodox Darwinians whenever they hear the word “rapid” or the name “Goldschmidt,” testifies to the conceptual power of saltation as a cardinal danger to an entire theoretical edifice. (Gould 2002: 143)

Darwin held firmly to the credo of small-scale variability as raw material because both poles of his great accomplishment required this proviso…. At the theoretical pole, natural selection can only operate in a creative manner if its cumulating force builds adaptation step by step from an isotropic pool of small-scale variability. If the primary source of evolutionary innovation must be sought in the occasional luck of fortuitous saltations, then internal forces of variation become the creative agents of change, and natural selection can only help to eliminate the unfit after the fit arise by some other process. (Gould 2002: 143-142)


UNDIRECTED. Textbooks of evolution still often refer to variation as “random.” We all recognize this designation is a misnomer, but continue to use the phrase by force of habit. Darwinians have never argued for “random” mutation in the restricted and technical sense of “equally likely in all directions,” as in tossing a die. [Rather it means statistical frequencies around a modal norm, like the bell curve for example, which does not imply that the underlying cause is totally random like tossing die.] But our sloppy use of “random” (see Eble, 1999) does capture, at least in a vernacular sense, the essence of the important claim that we do wish to convey—namely, that variation must be unrelated to the direction of evolutionary change; or, more strongly, that nothing about the process of creating raw material biases the pathway of subsequent change in adaptive directions. This fundamental postulate gives Darwinism its “two step” character, the “chance” and “necessity” of Monad’s famous formulation the separation of a source of raw material (mutation, recombination, etc.) from a force of change (natural selection). (Gould 2002: 144)

In a sense, the specter of directed variability threatens Darwinism even more seriously than any putative failure of the other two postulates. Insufficient variation stalls natural selection; saltation deprives selection of a creative role but still calls upon Darwin’s mechanism as a negative force. With directed variation, however, natural selection can be bypassed entirely. If adaptive pressures automatically trigger heritable variation in favored directions, then trends can proceed under regimes of random mortality; natural selection, acting as a negative force, can, at most, accelerate the change. (Gould 2002: 145)

(….) Darwin clearly understood the threat of directed variability to his cardinal postulate of creativity for natural selection. He explicitly restricted the sources of variation to auxiliary roles as providers of raw material, and granted all power over the direction of evolutionary change to natural selection…. He recognized biased tendencies to certain states of variation, particularly reversions toward ancestral features. But he viewed such tendencies as weak and easily overcome by selection. Thus, by the proper criterion of relative power and frequency, selection controls the direction of change: “When under nature the conditions of life do change, variations and reversions of character probably do occur; but natural selection, as will hereafter be explained, will determine how far the new characters thus arising shall be preserved” (p. 15) (Gould 2002: 145)

We may summarize Darwin’s third requirement for variation under the rubric of isotropy, a common term in mineralogy (and other sciences) for the concept of a structure or system that exhibits no preferred pathway as a consequence of construction with equal properties in all directions. Darwinian variation must be copious in amount, small in extent, and effectively isotropic. (….) Only under these stringent conditions can natural selection—a force that makes nothing directly, and must rely upon variation for all raw material—be legitimately regarded as creative. (Gould 2002: 145)

(….) Gradualism. Selection becomes creative only if it can impart direction to evolution by superintending the slow and steady accumulation of favored subsets from an isotropic pool of variation. If gradualism does not accompany this process of change, selection must relinquish this creative role and Darwinism then fails as a creative source of evolutionary novelty. If important new features, or entire new taxa, arise as large and discontinuous variations, then creativity lies in the production of the variation itself. Natural selection no longer causes evolution, and can only act as a headsman for the unfit, thus promoting changes that originated in other ways. Gradualism therefore becomes a logical consequence of the operation of natural selection in Darwin’s creative mode. (Gould 2002: 149)

(….) INSENSIBILITY OF INTERMEDIACY. We now come to the heart of what natural selection requires. This … “just right,” statement does not advance a claim about how much time a transition must take, or how variable a rate of change might be. (….) [And in this meaning of “gradualism,” it is simply asserted that] … in going from A to a substantially different B, evolution must pass through a long and insensible sequence of intermediary steps—in other words, that ancestor and descendant must be linked by a series of changes, each within the range of what natural selection might construct from ordinary variability. Without gradualism in this form, large variations of discontinuous morphological import—rather than natural selection—might provide the creative force of evolutionary change. But if the tiny increment of each step remains inconsequential in itself, then creativity must reside in the summation of these steps into something substantial natural selection, in Darwin’s theory, acts as the agent of accumulation. (Gould 2002: 150)

(….) If the altered morphology of new species often arose in single steps by fortuitous macromutation, then selection would lose its creative role and could act only as a secondary and auxiliary force to spread the sudden blessing through a population. But can we justify Darwin’s application of the same claim to single organs? (….) Would natural selection perish if change in this mode were common? I don’t think so. Darwinian theory would require some adjustments and compromises particularly a toning down of assertions about isotropy of variation, and a more vigorous study of internal constraint in genetics and development … —but natural selection would still enjoy a status far higher than that of a mere executioner. A new organ does not make a new species; and a new morphology must be brought into functional integration—a process that requires secondary adaptation and fine tuning, presumably by natural selection, whatever the extent of the initial step. (Gould 2002: 150)

The Evolution of the Genome

The biggest intellectual danger of any evolutionary research is the temptation to find satisfaction in ingenious “just so” stories. Devo-evo, as the youngest member of the evolutionary sciences, is in particular danger of falling into this trap, as other branches of evolutionary biology did in the past. (Laubichler and Maienschein 2007: 529).

(….) One of the main sources of intellectual excitement in devo-evo is the prospect of understanding major evolutionary transformations. If developmental evolution were to focus exclusively on microevolutionary processes, the field would abandon that major objective. In other words, even a very successful microevolutionary approach to developmental evolution would not fulfill the expectations that have been raised: bridging the gap between evolutionary genetics and macroevolutionary pattern. (Laubichler and Maienschein 2007: 530)

— Laubichler and Maienschein 2007: 529. In Embryology to Evo-Devo: A History of Developmental Evolution.

~ ~ ~

Darwin has often been depicted as a radical selectionist at heart who invoked other mechanisms only in retreat, and only as a result of his age’s own lamented ignorance about the mechanisms of heredity. This view is false. Although Darwin regarded selection as the most important of evolutionary mechanisms (as do we), no argument from opponents angered him more than the common attempt to caricature and trivialize his theory by stating that it relied exclusively upon natural selection. In the last edition of the Origin, he wrote (1872, p. 395):

As my conclusions have lately been much misrepresented, and it has been stated that I attribute the modification of species exclusively to natural selection, I may be permitted to remark that in the first edition of this work, and subsequently, I placed in a most conspicuous position–namely at the close of the introduction—the following words: “I am convinced that natural selection has been the main, but not the exclusive means of modification.” This has been of no avail. Great is the power of steady misinterpretation.

Charles Darwin, Origin of Species (1872, p. 395)

— Gould, Stephen J., & Lewontin, Richard C. (1979) The Spandrels of San Marco and the Panglossian Paradigm: A Critique of the Adaptationist Programme. PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON, SERIES B, VOL. 205, NO. 1161, PP. 581-598.

~ ~ ~

Dichotomy is both our preferred mental mode, perhaps intrinsically so, and our worst enemy in parsing a complex and massively multivariate world (both conceptual and empirical). Simpson, in discussing “the old but still vital problem of micro-evolution as opposed to macro-evolution” (ref. 10, p. 97), correctly caught the dilemma of dichotomy by writing (ref. 10, p. 97): “If the two proved to be basically different, the innumerable studies of micro-evolution would become relatively unimportant and would have minor value for the study of evolution as a whole.”

Faced with elegant and overwhelming documentation of microevolution, and following the synthesist’s program of theoretical reduction to a core of population genetics, Simpson opted for denying any distinctive macroevolutionary theory and encompassing all the vastness of time by extrapolation. But if we drop the model of dichotomous polarization, then other, more fruitful, solutions become available.

— Gould, Stephen Jay. Tempo and mode in the macroevolutionary reconstruction of Darwinism. National Academy of Sciences Colloquim “Tempo and Mode in Evolution”; 1994 Jul: 6767-6768. Emphasis added.

~ ~ ~

If Darwin were alive today, I have no doubt his love of truth would lead him to follow the evidence—the facts—wherever they might chance to lead. Darwin was not a dogmatist, but he was dogged in pursuing facts and duly humble in his theoretical interpretations of them. The question of real import is not whether natural selection is a real phenomenon, for it is (aside from its reification into a ‘thing’, which it is not), but whether it is the source of novelty. There is no doubt that we can through artificial selection bring forth existing phenotypic plasticity (e.g., shifting the number of hairs on a fruit fly) ; but that is merely tweaking already existing features similar to how the environment brings about morphological changes due to phenotypic plasticity, the former being artificial, while the latter natural. Natural selection reveals how nature sifts the survival of the fittest, but theoretically speaking, tells us nothing when used as the basis for an unwarranted extrapolation about the arrival of the fittest. When science has mastered the arrival of the fittest we will have mastered evolution itself.

~ ~ ~

At some point, such heritable regulatory changes will be created in a test animal in the laboratory, generating a trait intentionally drawing on various conserved processes. At that point, doubters [of organic evolution] would have to admit that if humans can generate phenotypic variation in the laboratory in a manner consistent with known evolutionary changes, perhaps it is plausible that facilitated variation has generated change in nature.

— Gerhart, C. and Kirschner Marc W. The Plausibility of Life: Resolving Darwin’s Dilemma. New Haven: Yale University Press; 2005; p. 237. Emphasis added.

~ ~ ~

Natural selection does not act on anything, nor does it select (for or against), force, maximize, create, modify, shape, operate, drive, favor, maintain, push, or adjust. Natural selection does nothing. Natural selection as a natural force belongs in the insubstantial category already populated by the Becker/Stahl phlogiston or Newton’s “ether.” ….

Having natural selection select is nifty because it excuses the necessity of talking about the actual causation of natural selection. Such talk was excusable for Charles Darwin, but inexcusable for evolutionists now. Creationists have discovered our empty “natural selection” language, and the “actions” of natural selection make huge vulnerable targets. (Provine 2001: 199-200)

Provine, William B. The Origins of Theoretical Population Genetics. Chicago: Chicago University Press; 2001; c1971 pp. 199-200. Emphasis added.

~ ~ ~

The Epigenetic System of Heredity and Phenotypic Variation

In response to various environmental stimuli metazoans develop a wide variety of discrete biological adaptations, new phenotypic characters, without changes in genes and genetic information. Such abrupt emergence or new morphological and life history (as well as physiological and behavioral) characters requires information. The fact that the genetic information does not change, implies that information of a type other than genetic information is responsible for the development of those characters.

(…) [T]he CNS, in response to external stimuli, releases specific chemical signals, which start signal cascades that result in adaptive morphological and physiological changes in various organ or parts of the body. In other words, information for those adaptations flows from the CNS to the target cells, tissues and organs. … [I]t was also proven the nongenetic, computational nature and origin of that information.

The CNS generates its information by processing the input of external stimuli. As defined in this work, a stimulus is a perceptible change in an environmental agent to which the CNS responds adaptively. Changes in the environment may be as big as to cause stress condition and radical changes in environment are often associated with adaptive changes in morphology. (Cabej 2004: 209)

Cabej, Nelson R. Neural Control of Development: The Epigenetic Theory of Heredity. New Jersey: Albanet; 2004; p. 209.

Natural selection is today, understood in the context of what we now know, a description of the relationship between an organism’s phenotypic plasticity and its environment. This relationship can be empirically observed, both in nature and the laboratory, shifting existing features and attributes of an organism, by selectively altering gene frequencies in the lab, or by observing phenotypic responses to environmental signals in nature.

Macroevolution and the Genome

There are many ways of studying the mechanisms and outcomes of evolution, ranging from genetics and genomics at the lowest scales through to paleontology at the highest. Unfortunately, the division into specialties according to scale has often led to protracted disagreement among evolutionary theorists from different disciplines regarding the nature of the evolutionary processes. Although the resulting debate has undoubtedly led to a refinement of the various theoretical approaches employed, it has also prevented the development of a complete and unified theory of evolution. Without such a theory, all evolutionary phenomena, including those involving features of the genome, will remain at best only partially understood. (….) The goal … is to provide an expansion, not a refutation, of existing evolutionary theory, and to build some much-needed bridges across traditionally disparate disciplines. (Gregory 2005: 679-680)

From Darwin to Neo-Darwinism

Charles Darwin did not invent the concept of evolution (“descent with modification” or “transmutation,” in the terminology of his time). In fact, the notion of evolutionary change long predates Darwin’s (1859) contributions in On the Origin of Species, which were essentially twofold: (1) providing extensive evidence, from a variety of sources, for the fact that species are related by descent, and (2) developing his theory of natural selection to explain this fact. Although quite successful in establishing the fact of evolution (the subsequent Creationist movement in parts of North America notwithstanding), Darwin’s explanatory mechanism of natural selection received only a lukewarm reception in contemporary scientific circles. (Gregory 2005: 680)

By the beginning of the 20th century, Darwinian natural selection had fallen largely out of favor, having been overshadowed by several other proposed mechanisms including mutationism, whereby species form suddenly by single mutations, with no intermediates; saltationism, in which major chromosomal rearrangements generate new species suddenly; neo-Lamarckism, which supposed that traits are improved directly through use and lost through disuse; and orthogenesis, under which inherent propelling forces drive evolutionary changes, sometimes even to the point of being maladaptive. Mutationism, in particular, gained favor after the rediscovery of Mendel’s laws of inheritance by Hugo de Vries and others, which showed heredity to be “particulate”—with individual traits passed on intact, even if hidden for a generation—rather than “blending,” as Darwin had believed. Particulate inheritance was taken by de Vries and others to imply that discontinuous variation in traits would be much more important than continuous variability expected under gradual Darwinian selection. (Gregory 2005: 680-681)

The problem faced by proponents of Darwinism was to reconcile the concept of discrete hereditary units with the graded variation required by natural selection. This issue was settled in the 1930s and 1940s with the advent of population genetics, which provided mathematical models to describe the behavior of genic variants (“alleles”) within populations, and showed that a particulate mechanism of inheritance did not prohibit the action of natural selection. This new theoretical framework is generally know as “neo-Darwinism” or the “Modern Synthesis,” because it sought to synthesize (i.e., combine) Mendelian genetics and Darwinian natural selection. (Gregory 2005: 681)

The first stage in the development of population genetics was to determine how alleles segregate within populations under “equilibrium” conditions. The issue was addressed by H.G. Hardy and Wilhelm Weinberg, resulting in what is now know as the “Hardy-Weinberg equilibrium,” a null hypothesis about the behavior of alleles in population that are not subject to natural selection, genetic drift (random changes in allele frequencies, for example by the accidental loss of a subset of the population, passage through a population bottleneck, or the founding of a new population by an unrepresentative sample of the parental population), gene flow (an influx of alleles from other populations by migration), or mutation (the generation of new alleles). When populations are not in Hardy-Weinberg equilibrium, one can begin to investigate which of these processes is (or are) responsible. More complex population genetics models were developed for dealing with this issue, most notably by Ronald Fisher, Sewall Wright, and J.B. Haldane. Others, like Theodosius Dobzhansky and G.L. Stebbins, established that natural populations contain sufficient genetic variation for these new models to work. (Gregory 2005: 681)

According to Provine (1988), the Modern Synthesis was really more of a “constriction” than an actual “synthesis,” in which a major goal was the elimination of the non-Darwinian alternatives listed previously and the associated restoration of selection to prominence in evolutionary theory. In at least one important sense, the term “synthesis” is clearly a misnomer, given that there remained a highly acrimonious divide between Fisher, who favored models based on large populations with a dominant role for selection, and Wright, whose “adaptive landscape” model dealt primarily with small populations and emphasized genetic drift. Despite these divisions, neo-Darwinians did succeed in narrowing the range of explanatory approaches to those involving mutation, selection, drift, and gene flow. (Gregory 2005: 681)

Genomes, Fossils, and Theoretical Inertia

As far as genetics is concerned, evolutionary theory has always been far ahead of its time. Darwin’s theory of natural selection was developed in the absence of concrete knowledge of hereditary mechanisms, and the mathematical framework of neo-Darwinism was assembled before the structure of DNA had been established (and even before DNA was identified as the molecule of inheritance). As a consequence, numerous surprises, puzzles, and conflicts have emerged from new discoveries in genetics and genomics. Consider, for example, the recent findings of deep genetic homology undergirding “analogous” features of unrelated organisms, the role of clustered master control genes in regulating development, the remarkable low gene numbers in humans, the collapse of the “one gene-one protein” model, the extraordinary abundance of transposable elements in the genomes of humans and other species, and the increasing evidence for the role of large-scale genome duplications in evolution. Also recognized for decades (and still the subject of healthy debate) are the importance of smaller-scale gene duplications, the role recurrent hybridization and polyploidy, the preponderance of neutral evolution at the molecular level, and the initially quite alarming disconnect between genome size and organismal complexity. Advances in genetics and genomics have also provided revolutionary insights into the relationships among organisms, from the smallest scales (e.g., human-chimpanzee genetic similarity) to the largest (e.g., deep divergences between “prokaryote” groups). None of these was (or indeed, could have been) predicted or expected by the accepted formulation of evolutionary theory that preceded it. This historical record in evolutionary biology is that theories are developed under assumptions about the existence—or perhaps more commonly, the absence—of certain genetic mechanisms, and must later be revised as new knowledge comes to light regarding genomic structure, organization, and function. This mode of progress is not necessarily problematic, except when theoretical inertia forestalls the acceptance of the new information and its implications. (Gregory 2005: 682)

Genomics is not the only field to have faced theoretical inertia. For decades, prominent paleontologists have argued that their observations of the fossil record fail to fit the expectations of strict Darwinian gradualism. Darwin’s view of speciation, sometimes labeled as “phyletic gradualism,” was based on the slow, gradual (but not necessarily constant) evolution of one species or large segments thereof into another through a series of imperceptible changes, often without any splitting of lineages (i.e., by “anagenesis”). By contrast, the theory of “punctuated equilibria” (“punk eek” to afficionados,” “evolution by jerks” to some critics) proposes that most species experience pronounced morphological stasis for most of their time, with change occurring only in geologically rapid bursts associated with speciation events (Eldredge and Gould, 1972; Gould and Eldredge, 1977, 1993; Gould, 1992, 2002). Moreover, speciation in this second case involves the branching off of new species (“cladogenesis”) via small, peripherally isolated populations rather than the gradual transformation of the parental stock itself. (Gregory 2005: 682-683)

Based on differences such as these, many of those who study evolutionary patterns in deep time have developed alternative theoretical approaches to account for the large-scale features of evolution. This, too, has generally proceeded with a minimal consideration of genomic information, and as such there is a need for increased communication between these two fields. In fact, despite their residence at opposite ends of the spectrum in evolutionary science, there is great potential for intergration between genomics and paleontology because ultimately both are concerned with variation among species and higher taxa. (Gregory 2005: 683-684)


Microevolution, Macroevolution, And Extrapolationism

The extent to which processes observable within populations and tractable in mathematical models can be extrapolated to explain patterns of diversification occurring in deep time remains one of the most contentious issues in modern evolutionary biology. This is a debate with a lengthy pedigree, extending back more than 75 years, and therefore long predating any of the issues of genome evolution … Nevertheless, genomes reside at an important nexus in this debate by containing the genes central to population-level discussions, but also having their own complex large-scale evolutionary histories. (Gregory 2005: 684)

Writing as an orthogeneticist in 1927, prior to the Modern Synthesis when Darwinian natural selection was largely eclipsed as a mechanism of evolutionary change, Iurii Filipchenko made the following argument:

Modern genetics doubtless represents the veil of the evolution of Jordanian and Linnaean biotypes (microevolution), contrasted with the evolution of higher systematic groups (macroevolution), which has long been of central interest. This serves to underline the above-cited consideration of the absence of any intrinisic connection between genetics and the doctrine of evolution, which deals particularly with macroevolution.

[Translation as in Hendry and Kinnison, 2001].

In modern parlance, microevolution represents the small-scale changes in allele frequencies that occur within populations (as studied by population geneticists and often observable over the span of a human lifetime), whereas macroevolution involves the generation of broad patterns above the species level over the course of Earth history (as studied in the fossil record by paleontologists, and with regard to extant taxa by systematists). … Dobzhansky (1937, p. 12) noted that because macroevolution could not be observed directly, “we are compelled at the present level of knowledge reluctantly to put a sign of equality between the mechanisms of macro- and micro-evolution.” However, although Dobzhansky was tentative in his assertion of micro-macro equivalence, the doctrine of “extrapolationism” was embraced as a fact by many other architects and early adherents of the Modern Synthesis. Thus as Mayr (1963, p. 586) later explained, “the proponents of the synthetic theory maintain that all evolution is due to the accumulation of small genetic changes, guided by natural selection, and the events that take place within populations and species” (emphasis added). There was an obvious reason for this strict adherence to extrapolationism at the time, namely the belief that if micro- and macroevolution “proved to be basically different, the innumerable studies of micro-evolution would become relatively unimportant and would have minor value in the study of evolution as a whole” (Simpson, 1944, p. 97). As such, only proponents of non-Darwinian mechanisms, most notably the much-maligned saltationist Richard Goldschmidt (1940, p. 8), argued at the time that “the facts of microevolution do not suffice for an understanding of macroevolution.” (Gregory 2005: 684-685)

Obviously, the “present level of knowledge” is not the same today as it was in Dobzhansky’s time. A great deal of new information has since been gleaned—and continues to accrue—regarding the mechanisms of heredity and the major patterns of evolutionary diversification. Considering Mayr’s statement, it is now clear that not all relevant genetic changes are small (cf., genome duplications), nor is all change guided by natural selection (cf., neutral molecular evolution), nor do all relevant processes operate within populations and species (cf., hybridization). In one of the more notorious exchanges on the subject, Gould (1980) went so far as to declare this simple version of the neo-Darwinian synthesis as “effectively dead, despite its persistence as textbook orthodoxy.”1 To be more specific, this applies not to the Modern Synthesis at large, but to strict extrapolationism. Using a far less aggressive tone, another prominent macroevolutionist put it as follows: “The advances in molecular biology contribute to the need for a formal expansion of evolutionary theory is an exigency we can hardly hold against the early architects of the synthesis” (Eldredge, 1985, p. 86), it is interesting to imagine the view that Fisher, Dobshansky, Haldane, Wright, or even Darwin might have taken had they been privy to modern insights. (Gregory 2005: 685-686)

Simpson’s (1944) account of the threat to the relevance of microevolution is also in need of revision. It is simply not the case that a mechanistic disconnect between micro- and macroevolution would render microevolutionary study obsolete. Far from it, because any genomic changes, regardless of the magnitude of their effects, must still pass through the filters of selection and drift to reach a sufficiently high frequency if they are to be of evolutionary significance. So, even if understanding this filtration process does not, by itself, provide a complete understanding of macroevolution, it would still be a crucial component of an expanded evolutionary theory. Consider, for example, the topic of major developmental regulation genes, which involves at least four different questions, all mutually compatible, studied by four different disciplines: (1) Evolutionary developmental biology (“evo-devo”)—How do such genes act to produce observed phenotypes? (2) Comparative genomics—What is the structure of these genes, and what role did processes like gene (or genome) duplication play in their evolution? (3) Population genetics—How would such genes have been filtered by selection, drift, and gene flow to reach their current rate of fixation? (4) Paleontology—What is the relevance of these genes for understanding the emergence of new body plans and thus new macroevolutionary trajectories (e.g., Carroll, 2000; Erwin, 2000; Jablonski, 2000; Shubin and Marshall, 2000)? (Gregory 2005: 686)

Though the protagonists have often been divided along these professional lines, the micro-macro debate is not between paleontologists and population geneticists per se. Rather, it is between strict extrapolationists who argue that all evolution can be understood by studying population-level processes and those who argue that there are additional factors to consider. Members of this latter camp may come from all quarters of evolutionary biology, from genome biologists to paleontologists, although the latter have been by far the most vocal proponents of an expanded outlook. For strict extrapolationists, there may be little value in pursuing this debate. But for those open to a more pluralistic approach who seek a resolution to the issue, there is much value in understanding the arguments presented in favor of a distinct macroevolutionary theory that coexists with, but is not subsumed by, established microevolutionary principles. (Gregory 2005: 686)

Critiques of Strict Extrapolationism

1 Of course, far from simply mourning their loss, microevolutionists responded to this charge with some vigor (e.g., Stebbins and Ayala, 1981; Charlesworth et al., 1982; Hecht and Hoffman, 1986), perhaps overlooking the fact that only the strict extrapolationist definition given by Mayr (1963), and not the synthesis in its entirety, was proclaimed deceased (see Gould, 2002). Although some may argue that Mayr’s (1963) definition was already outdated by this time, and that Gould’s (1980) criticism was therefore misplaced, it bears noting that such a definition had been in common use throughout the period in question and well beyond (e.g., Mayr, 1980; Ruse, 1982; Hecht and Hoffman, 1986). As for Gould’s (1980) claim of “‘textbook orthodoxy,’ one may consider Freeman and Herron’s (1998) recent textbook, which considers the Modern Synthesis to be composed of two main postulates: “[1] Gradual evolution results from small genetic changes that are acted upon by natural selection. [2] The origin of species and higher taxa, or macroevolution, can be explained in terms of natural selection acting on individuals, or microevolution.” Futuyma’s (1998) more advanced text provides a much more detailed description of the Modern Synthesis but the fundamental extrapolationist point remains.